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1

On speaking politely in a second language

SCARCELLA, ROBIN, BRUNAK, JOANNA

Journal:

International Journal of the Sociology of Language

Year:

1981

Language:

english

File:

PDF, 1.87 MB

english, 1981

2

Extrapolation of drug induced liver injury responses from cancer cell lines using machine learning approaches

Aguayo-Orozco, Alejandro, Brunak, SÃ¸ren, Taboureau, Olivier

Journal:

Computational Toxicology

Year:

2021

File:

PDF, 690 KB

2021

3

Implementation and comparison of two text mining methods with a standard pharmacovigilance method for signal detection of medication errors

Eskildsen, Nadine Kadi, Eriksson, Robert, Christensen, Sten B., Aghassipour, Tamilla Stine, BygsÃ¸, Mikael Juul, Brunak, SÃ¸ren, Hansen, Suzanne Lisbet

Journal:

BMC Medical Informatics and Decision Making

Year:

2020

File:

PDF, 1.40 MB

2020

4

Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules

Hansen, Niclas Tue, Kouskoumvekaki, Irene, Jørgensen, Flemming Steen, Brunak, Søren, Jónsdóttir, Svava Ósk

Journal:

Journal of Chemical Information and Modeling

Year:

2006

Language:

english

File:

PDF, 191 KB

english, 2006

5

Protein Structures from Distance Inequalities

Jakob Bohr, Henrik Bohr, Søren Brunak, Rodney M.J. Cotterill, Henrik Fredholm, Benny Lautrup, Steffen B. Petersen

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 583 KB

1993

6

sAOP: Linking chemical stressors to Adverse Outcomes Pathway Networks

Aguayo-Orozco, Alejandro, Audouze, Karine, Siggaard, Troels, Barouki, Robert, Brunak, Søren, Taboureau, Olivier, Cowen, Lenore

Journal:

Year:

2019

Language:

english

File:

PDF, 380 KB

english, 2019

7

Knowledge engineering for health: A new discipline required to bridge the “ICT gap” between research and healthcare

Tim Beck, Sirisha Gollapudi, Søren Brunak, Norbert Graf, Heinz U. Lemke, Debasis Dash, Iain Buchan, Carlos Díaz, Ferran Sanz, Anthony J. Brookes

Journal:

Year:

2012

Language:

english

File:

PDF, 322 KB

english, 2012

8

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

Blair, David R., Lyttle, Christopher S., Mortensen, Jonathan M., Bearden, Charles F., Jensen, Anders Boeck, Khiabanian, Hossein, Melamed, Rachel, Rabadan, Raul, Bernstam, Elmer V., Brunak, Søren, Jens

Journal:

Year:

2013

Language:

english

File:

PDF, 2.60 MB

english, 2013

9

Disease trajectory browser for exploring temporal, population-wide disease progression patterns in 7.2 million Danish patients

Siggaard, Troels, Reguant, Roc, JÃ¸rgensen, Isabella F., Haue, Amalie D., Lademann, Mette, Aguayo-Orozco, Alejandro, Hjaltelin, Jessica X., Jensen, Anders Boeck, Banasik, Karina, Brunak, SÃ¸ren

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.93 MB

2020

10

Network biology concepts in complex disease comorbidities

Hu, Jessica Xin, Thomas, Cecilia Engel, Brunak, Søren

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 915 KB

english, 2016

11

Prediction of the secondary structure of HIV-1 gp120

Hansen, Jan E., Lund, Ole, Nielsen, Jens O., Brunak, Søren, Hansen, John-E. S.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.24 MB

english, 1996

12

Alcoholic liver disease: A registry view on comorbidities and disease prediction

Grissa, Dhouha, Nytoft Rasmussen, Ditlev, Krag, Aleksander, Brunak, SÃ¸ren, Juhl Jensen, Lars, Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 1.98 MB

2020

13

Prediction of lipoprotein signal peptides in Gram-negative bacteria

Agnieszka S. Juncker, Hanni Willenbrock, Gunnar von Heijne, Søren Brunak, Henrik Nielsen, Anders Krogh

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 336 KB

english, 2003

14

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

Nielsen, H., Engelbrecht, J., Brunak, S., von Heijne, G.

Journal:

Protein Engineering Design and Selection

Year:

1997

Language:

english

File:

PDF, 273 KB

english, 1997

15

SignalP 5.0 improves signal peptide predictions using deep neural networks

Almagro Armenteros, José Juan, Tsirigos, Konstantinos D., Sønderby, Casper Kaae, Petersen, Thomas Nordahl, Winther, Ole, Brunak, Søren, von Heijne, Gunnar, Nielsen, Henrik

Journal:

Nature Biotechnology

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019

16

Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

Terkelsen, Thilde, Russo, Francesco, Gromov, Pavel, Haakensen, Vilde Drageset, Brunak, SÃ¸ren, Gromova, Irina, Krogh, Anders, Papaleo, Elena

Journal:

Breast Cancer Research

Year:

2020

File:

PDF, 3.33 MB

2020

17

Sex differences in text-mined possible adverse drug events associated with drugs for psychosis

SÃ¸rup, Freja Karuna Hemmingsen, Eriksson, Robert, Westergaard, David, Hallas, Jesper, Brunak, SÃ¸ren, Ejdrup Andersen, Stig

Journal:

Journal of Psychopharmacology

Year:

2020

File:

PDF, 1.19 MB

2020

18

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

Nielsen, Henrik, Engelbrecht, Jacob, Brunak, Søren, Heijne, Gunnar Von

Journal:

International Journal of Neural Systems

Year:

1997

Language:

english

File:

PDF, 593 KB

english, 1997

19

Assessing the accuracy of prediction algorithms for classification: an overview

Baldi, P., Brunak, S., Chauvin, Y., Andersen, C. A. F., Nielsen, H.

Journal:

Year:

2000

Language:

english

File:

PDF, 142 KB

english, 2000

20

Propionibacterium acnes – disease causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing

Mollerup, Sarah, Friis-Nielsen, Jens, Vinner, Lasse, Hansen, Thomas Arn, Richter, Stine Raith, Fridholm, Helena, Herrera, Jose Alejandro Romero, Lund, Ole, Brunak, Søren, Izarzugaza, Jose M. G., Mouri

Journal:

Journal of Clinical Microbiology

Year:

2016

Language:

english

File:

PDF, 875 KB

english, 2016

21

Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds

Geertz-Hansen, Henrik Marcus, Blom, Nikolaj, Feist, Adam M., Brunak, Søren, Petersen, Thomas Nordahl

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 306 KB

english, 2014

22

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

Nikolaj Blom, Thomas Sicheritz-Pontén, Ramneek Gupta, Steen Gammeltoft, Søren Brunak

Journal:

Year:

2004

Language:

english

File:

PDF, 299 KB

english, 2004

23

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

Eriksson, Robert, Jensen, Peter Bjødstrup, Frankild, Sune, Jensen, Lars Juhl, Brunak, Søren

Journal:

Journal of the American Medical Informatics Association

Year:

2013

Language:

english

File:

PDF, 296 KB

english, 2013

24

Cutavirus in Cutaneous Malignant Melanoma

Mollerup, Sarah, Fridholm, Helena, Vinner, Lasse, Kjartansdóttir, Kristín Rós, Friis-Nielsen, Jens, Asplund, Maria, Herrera, Jose A.R., Steiniche, Torben, Mourier, Tobias, Brunak, Søren, Willerslev, E

Journal:

Emerging Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 376 KB

english, 2017

25

Population-wide analysis of differences in disease progression patterns in men and women

Westergaard, David, Moseley, Pope, Sørup, Freja Karuna Hemmingsen, Baldi, Pierre, Brunak, Søren

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 964 KB

english, 2019

26

Identification of T1D susceptibility genes within the MHC region by combining protein interaction networks and SNP genotyping data

C. Brorsson, N. T. Hansen, K. Lage, R. Bergholdt, S. Brunak, F. Pociot, Diabetes Genetics Consortium

Journal:

Diabetes, Obesity and Metabolism

Year:

2009

Language:

english

File:

PDF, 119 KB

english, 2009

27

Protein secondary structure: category assignment and predictability

Claus A Andersen, Henrik Bohr, Søren Brunak

Journal:

Year:

2001

Language:

english

File:

PDF, 274 KB

english, 2001

28

Bacterial diversity in snow on North Pole ice floes

Hauptmann, Aviaja L., Stibal, Marek, Bælum, Jacob, Sicheritz-Pontén, Thomas, Brunak, Søren, Bowman, Jeff S., Hansen, Lars H., Jacobsen, Carsten S., Blom, Nikolaj

Journal:

Year:

2014

Language:

english

File:

PDF, 486 KB

english, 2014

29

MetaRanker 2.0: a web server for prioritization of genetic variation data

Pers, T. H., Dworzynski, P., Thomas, C. E., Lage, K., Brunak, S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 1.61 MB

english, 2013

30

Alternative Splicing in Colon, Bladder, and Prostate Cancer Identified by Exon Array Analysis

Thorsen, K., Sorensen, K. D., Brems-Eskildsen, A. S., Modin, C., Gaustadnes, M., Hein, A.-M. K., Kruhoffer, M., Laurberg, S., Borre, M., Wang, K., Brunak, S., Krainer, A. R., Torring, N., Dyrskjot, L.

Journal:

Molecular & Cellular Proteomics

Year:

2008

Language:

english

File:

PDF, 1.01 MB

english, 2008

31

Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks

Audouze, Karine, Juncker, Agnieszka Sierakowska, Roque, Francisco J. S. S. A., Krysiak-Baltyn, Konrad, Weinhold, Nils, Taboureau, Olivier, Jensen, Thomas Skøt, Brunak, Søren, Wiest, Olaf G.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 884 KB

english, 2010

32

ISMB 2001

Brunak, S., Krogh, A.

Journal:

Year:

2001

Language:

english

File:

PDF, 50 KB

english, 2001

33

Prediction of Disease Causing Non-Synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP

Johansen, Morten Bo, Izarzugaza, Jose M. G., Brunak, Søren, Petersen, Thomas Nordahl, Gupta, Ramneek, Crockett, David K.

Journal:

Year:

2013

Language:

english

File:

PDF, 671 KB

english, 2013

34

A large-cohort, longitudinal study determines pre-cancer disease routes across different cancer types

Hu, Jessica X, Helleberg, Marie, Jensen, Anders B, Brunak, Søren, Lundgren, Jens

Journal:

Cancer Research

Year:

2018

Language:

english

File:

PDF, 2.71 MB

english, 2018

35

Bias of purine stretches in sequenced chromosomes

David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh

Journal:

Computers & Chemistry

Year:

2002

Language:

english

File:

PDF, 579 KB

english, 2002

36

Training neural networks to analyse biological sequences

Steffen B. Petersen, Henrik Bohr, Jacob Bohr, Soren Brunak, Rodney M.J. Cotterill, Henrik Fredholm, Benny Lautrup

Journal:

Trends in Biotechnology

Year:

1990

Language:

english

File:

PDF, 1.94 MB

english, 1990

37

Naturally Occurring Nucleosome Positioning Signals in Human Exons and Introns

Pierre Baldi, Søren Brunak, Yves Chauvin, Anders Krogh

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 319 KB

english, 1996

38

Neural Network Model of the Genetic Code is Strongly Correlated to the GES Scale of Amino Acid Transfer Free Energies

N. Tolstrup, J. Toftgård, J. Engelbrecht, S. Brunak

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 340 KB

1994

39

Statistical analysis of protein kinase specificity determinants

Andres Kreegipuu, Nikolaj Blom, Søren Brunak, Jaak Järv

Journal:

Year:

1998

Language:

english

File:

PDF, 241 KB

english, 1998

40

Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells

Re, Angela, Workman, Christopher T., Waldron, Levi, Quattrone, Alessandro, Brunak, Søren

Journal:

Stem Cell Research

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

41

MatrixPlot: visualizing sequence constraints

Gorodkin, J., Staerfeldt, H. H., Lund, O., Brunak, S.

Journal:

Year:

1999

Language:

english

File:

PDF, 150 KB

english, 1999

42

Machine learning approaches for the prediction of signal peptides and other protein sorting signals

Nielsen, H., Brunak, S., von Heijne, G.

Journal:

Protein Engineering Design and Selection

Year:

1999

Language:

english

File:

PDF, 166 KB

english, 1999

43

Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N -acetylgalactosaminyltransferase

Hansen, J E, Lund, O, Engelbrecht, J, Bohr, H, Nielsen, J O, Hansen, J E S, Brunak, S

Journal:

Biochemical Journal

Year:

1995

Language:

english

File:

PDF, 2.15 MB

english, 1995

44

The impact of the protein interactome on the syntenic structure of mammalian genomes

Kirk, Isa Kristina, Weinhold, Nils, Brunak, Søren, Belling, Kirstine, Ouzounis, Christos A.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.39 MB

english, 2017

45

Sa.79. Identification of T1D Genes in the MHC Region by a Novel Approach Combining Genetic Data with Information on Functional Pathways

Caroline Brorsson, Niclas Hansen, Kasper Lage, Regine Bergholdt, Søren Brunak, Flemming Pociot

Journal:

Clinical Immunology

Year:

2008

Language:

english

File:

PDF, 40 KB

english, 2008

46

Distance-Based Approaches to Protein Structure Determination III (Copenhagen, Denmark, 5–8 November 1996) Introductory overview

Henrik Bohr, Søren Brunak

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 64 KB

english, 1997

47

Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics

Lundby, Alicia, Rossin, Elizabeth J, Steffensen, Annette B, Acha, Moshe Rav, Newton-Cheh, Christopher, Pfeufer, Arne, Lynch, Stacey N, Olesen, Søren-Peter, Brunak, Søren, Ellinor, Patrick T, Jukema, J

Journal:

Year:

2014

Language:

english

File:

PDF, 3.74 MB

english, 2014

48

On the Verification of the Method of Taking Into Account the Effect of Time Intervals in Cycle on the Low-Cycle Fatigue Resistance of Heat-Resistant Materials*

Simbirskii, D. F., Brunak, A. A.

Journal:

Strength of Materials

Year:

2015

Language:

english

File:

PDF, 243 KB

english, 2015

49

Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations

Kirk, Isa Kristina, Weinhold, Nils, Belling, Kirstine, Skakkebæk, Niels Erik, Jensen, Thomas Skøt, Leffers, Henrik, Juul, Anders, Brunak, Søren

Journal:

Year:

2017

Language:

english

File:

PDF, 1.98 MB

english, 2017

50

The Type 2 Diabetes Associated Minor Allele of rs2237895 KCNQ1 Associates with Reduced Insulin Release Following an Oral Glucose Load

Holmkvist, Johan, Banasik, Karina, Andersen, Gitte, Unoki, Hiroyuki, Jensen, Thomas Skot, Pisinger, Charlotta, Borch-Johnsen, Knut, Sandbæk, Annelli, Lauritzen, Torsten, Brunak, Sören, Maeda, Shiro, H

Journal:

Year:

2009

Language:

english

File:

PDF, 225 KB

english, 2009

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